This shot at the end of Into the Lion’s Den, Part 2:

John and Aeryn sitting in the window on command with Aeryn’s star in the background. John’s transferring the wormhole equations from his arms into his notebook, and Aeryn is just sitting with him.

With all the pain (on Aeryn’s side) and discord between them since Aeryn had arrived back on Moya, I’m watching these eps again and noticing that after that initial first day of arriving back on Moya, Aeryn was making an effort to let him know she wasn’t pushing him away; she just couldn’t be with him romantically yet.

Like here, she just sits with him. in Fractures she works beside him. She wouldn’t talk to him when he tried to get her to tell him what had happened, but she was still working next to him.

Then later, she sees him in his quarters, watching the message that the other John left to him, and then she walked away in the direction she came from. She purposely went looking for him and then she watched the video message and walked away without him knowing she was there.

It was like it hurt too much to be near him, but it also hurt too much to be away from him. So they had these moments of her just sitting in his presence, or just seeking him out in order to just see him, whether he knew she was there or not.